Studies on the helium, lead and sulfur isotopic composition were performed of the Gejiu super-large Sn-polymetallic ore deposit. The results indicated that the ore-forming materials came from different sources and the deposit is a product of superimposed mineralization. The deposit is characterized by multi-source and multi-period mineralization, which experienced submarine hydrothermal deposition and Late Yanshanian magmatic hydrothermal mineralization. It is held that the Gejiu super-large Sn-polymetallic ore deposit is a multi-genesis deposit.