A new computational procedure for derivation of marine geoid on a 2.5′×2.5′grid in a non-tidal system over the South China Sea and the Philippine Sea from multi-satellite altimeter sea surface heights is discussed. Single-and dual-satellite crossovers were performed, and components of deflections of the vertical were determined at the crossover positions using Sand-well's computational theory, and gridded onto a 2.5′×2.5′resolution grid by employing the Shepard's interpolation procedure. 2.5′×2.5′grid of EGM96-derived components of deflections of the vertical and geoid heights were then used as reference global geopotential model quantities in a remove-restore procedure to implement the Molodensky-like formula via 1D-FFT technique to predict the geoid heights over the South China Sea and the Philippine Sea from the gridded altimeter-derived components of deflec-tions of the vertical. Statistical comparisons between the altimeter-and the EGM96- derived geoid heights showed that there was a root-mean-square agreement of ±0.35 m between them in a region of less tectonically active geological structures. However, over areas of tectonically active structures such as the Philippine trench, differences of about -19.9 m were obtained.